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rs266040578 SNP Detail
Summary
  • ID
    rs266040578
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr4:57956484 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGGGG CGGAGCCAGA GTCGGCTACT
    W
    GTGCAGCCTG GGGACTGTCC TAGCG                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321136105 CHEV_4_57969356 CHEVERUD SCREENING_POP f SNP A T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs266040578 SNP A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:57956484 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14335 CpG island 14335 within coordinates
Gm35344 predicted gene, 35344 268 bp upstream
Gm57068 predicted gene, 57068 within coordinates
Rr398279 regulatory region 398279 within coordinates
Rr592848 regulatory region 592848 84 bp distal
Rr592849 regulatory region 592849 698 bp distal
Rr592850 regulatory region 592850 within coordinates
Rr592851 regulatory region 592851 36 bp distal
Rr592852 regulatory region 592852 250 bp proximal
Rr592853 regulatory region 592853 751 bp proximal
Tssr1183 transcription start site region 1183 126 bp upstream
Tssr1184 transcription start site region 1184 60 bp upstream
Tssr37396 transcription start site region 37396 138 bp upstream
Tssr37397 transcription start site region 37397 440 bp upstream
Tssr41866 transcription start site region 41866 186 bp upstream
Txn1 thioredoxin 1 73 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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