rs266048700 SNP Detail

Summary

• ID
  rs266048700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110682288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGGGAG GGAAGGGGGA
  GGAAGGAGAC GCGGCCGGCT TGAAAGTCTC AGCTCAGAGG AGTAGCTGCT GCAGCCGCCA
  CCTGGTACCC GCCGCCACCT CCATAGAGCT CCGGCTCGCT GCTGGCGCTG AGGCGTGTCT
  GAAGCCCAAC TTATCACTCT GAGGCGGCCG ACCCACTAGA GCCTCCCCGA GTGGCTCCTT
  Y
  GCTATCCAAT CAGCAGCCGG GCTTCCGTCC GCTACCAATC CGCGCAGGGC GGCGGGGAGG
  AGCCAGCGGG CAAGCTCGGT TGCGGCGCAG CCTCGCCGCA GTGCGCAAAG CCATATTCGC
  GAAGGCTCTG GGGCCAAGCC AGTGGCGTAA GGGCGGCGGG CCGGCGCGCT GCGGGACTCT
  TGCGTAGCGC CGGGAGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372719433	MGP_WTSI_7_118226595	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266048700					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372719433	MGP_WTSI_7_118226595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110682288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	within coordinates
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	51 bp upstream
Gm57201	predicted gene, 57201	within coordinates
Rr381309	regulatory region 381309	within coordinates
Rr653396	regulatory region 653396	506 bp distal
Rr653397	regulatory region 653397	75 bp distal
Rr653398	regulatory region 653398	within coordinates
Rr653399	regulatory region 653399	1535 bp proximal
Tssr68539	transcription start site region 68539	93 bp upstream
Tssr68540	transcription start site region 68540	129 bp upstream
Tssr68541	transcription start site region 68541	243 bp upstream
Tssr74297	transcription start site region 74297	1444 bp upstream
Tssr74298	transcription start site region 74298	1026 bp upstream
Tssr74299	transcription start site region 74299	830 bp upstream
Tssr74300	transcription start site region 74300	575 bp upstream
Tssr74301	transcription start site region 74301	541 bp upstream
Tssr74302	transcription start site region 74302	450 bp upstream
Tssr74303	transcription start site region 74303	44 bp upstream