rs266077554 SNP Detail

Summary

• ID
  rs266077554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184544838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atgtccccc cggctggtgg cgctatctgg
  ggaggctgaa gtaaatgatg aggtgtagcc tagctgggga ggaaggaagt ctcctgaggg
  ctggcCCCTT CCTGACCATC TGCTTCCTTC CCTTGGCTTG TCAGGTAAAA TTGACTCAGG
  R
  TACAGCTTCA TATCCCACAT TTACCTCACA GCCTGCTGGA AGCCAAGGGC CCAGGACCCA
  GCGAAGGAGA AGACGGAAGG AGCAACAGCT GTCCCCCATG GATGATATGT CTTTTGACAT
  CATCAGCTAT ATGCCTTAGA Ccagccgttc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169578	CHEV_1_186636520	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266077554					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184544838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1304 bp distal
Gm70890	predicted gene, 70890	within coordinates
Mtarc1	mitochondrial amidoxime reducing component 1	1444 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	427 bp downstream
Rr425290	regulatory region 425290	707 bp distal
Rr425291	regulatory region 425291	201 bp distal
Rr425292	regulatory region 425292	272 bp distal
Rr425293	regulatory region 425293	124 bp distal
Rr425294	regulatory region 425294	1804 bp proximal
Tssr15650	transcription start site region 15650	1650 bp upstream
Tssr15651	transcription start site region 15651	1478 bp upstream
Tssr15652	transcription start site region 15652	1438 bp upstream
Tssr15653	transcription start site region 15653	1377 bp upstream
Tssr15654	transcription start site region 15654	1338 bp upstream
Tssr15655	transcription start site region 15655	1327 bp upstream