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rs266081633 SNP Detail
Summary
  • ID
    rs266081633
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr11:69492553 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAACTTTTT GCCATAGTAG
GGAAAGTACA TCAGATCAAT GCTGCCATTA GCAGGGAACA TGACAAAGTG GCCAAGGTTC
TCAGCATCTT CATCTCTCTG TGGGGGTGCA GGAAGGTTAA GGGGAGAGGA TGTTAGGAAC
AGCAGGCACC TGGAAGCGCT CACAAGACTT CCTTCTGTAC CTCCTTCATC CCAAATTATC
M
CTGTCAAACT TGTTTTCTTT GAGCTGTGCA TCTGCTCAGG TAGCTGTGTG TGCATTTGTG
TGTGCGCATG CACACATGTT CCTATCTGCA TGTCTGCAGA TAGGGGTGGC CTATCTCCCA
TCAGACTAGG TCTTCTAAGG GTGCTGACAA CACGGTGAGG GCCTTCTAAC TCCACCATCA
ATCCCCAAGT TCTTACCCCG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383787322 MGP_WTSI_11_69415229 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs266081633 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383787322 MGP_WTSI_11_69415229 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:69492553 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Atp1b2 ATPase, Na+/K+ transporting, beta 2 polypeptide within coordinates
Gm72066 predicted gene, 72066 within coordinates
Rr386229 regulatory region 386229 271 bp downstream
Rr450033 regulatory region 450033 1988 bp distal
Rr450035 regulatory region 450035 1065 bp distal
Tssr3544 transcription start site region 3544 1023 bp upstream
Tssr102487 transcription start site region 102487 1687 bp downstream
Tssr102488 transcription start site region 102488 524 bp downstream
Tssr102489 transcription start site region 102489 478 bp downstream
Tssr108712 transcription start site region 108712 1709 bp upstream
Tssr108713 transcription start site region 108713 1558 bp upstream
Tssr108714 transcription start site region 108714 1490 bp upstream
Tssr108715 transcription start site region 108715 1456 bp upstream
Tssr108716 transcription start site region 108716 1152 bp upstream
Tssr108717 transcription start site region 108717 1138 bp upstream
Tssr108718 transcription start site region 108718 1074 bp upstream
Tssr108719 transcription start site region 108719 1072 bp upstream
Tssr108720 transcription start site region 108720 1056 bp upstream
Tssr108721 transcription start site region 108721 1047 bp upstream
Tssr108722 transcription start site region 108722 969 bp upstream
Tssr108723 transcription start site region 108723 932 bp upstream
Tssr108724 transcription start site region 108724 886 bp upstream
Tssr108725 transcription start site region 108725 864 bp upstream
Tssr108726 transcription start site region 108726 762 bp upstream
Tssr108727 transcription start site region 108727 741 bp upstream
Tssr108728 transcription start site region 108728 697 bp upstream
Tssr108729 transcription start site region 108729 612 bp upstream
Tssr108730 transcription start site region 108730 580 bp upstream
Tssr108731 transcription start site region 108731 538 bp upstream
Tssr108732 transcription start site region 108732 477 bp upstream
Tssr108733 transcription start site region 108733 725 bp downstream
Tssr108734 transcription start site region 108734 1016 bp downstream
Tssr108735 transcription start site region 108735 1083 bp downstream
Tssr108736 transcription start site region 108736 1121 bp downstream
Tssr108737 transcription start site region 108737 1811 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory