rs266081823 SNP Detail

Summary

• ID
  rs266081823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51893249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGAGAC CTTGTCTTGG
  GGGAAAACAG GCTTTTTAAA TCCCCTGGGC CGGTAACAAG TGCCTGGGCT TTTTTAAATT
  TCCGTCCAGC CATACCAATG TTAATCTTCC TCATGATCAA GAAATACATA GAGTGAAATG
  GCAGACGCTT TTTAAAAATC TCATTCTGTT GCTTATCTAG CAATTTATTA CTTTAAAAAA
  Y
  GGACGGGATA GTTTTTAATA TCCAAAATGA AATGTTTTGA TAAATTGAAT GCTTCCCAAA
  AATATAGAGA GCAGAATGTT AACAAAATTC ACACAATTTC ATGGCCAGGT GGCTTGCTGG
  AAACCTACAA CCGCAGTCTT AGAACTATAA TTTCACTTAT TAAAACAGGG TAACTTGCTA
  TGTAGACCAG GCTGGCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383367120	MGP_WTSI_11_51815924	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266081823					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383367120	MGP_WTSI_11_51815924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51893249 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	1799 bp upstream
Cpgi2846	CpG island 2846	1478 bp distal
Cpgi2847	CpG island 2847	1630 bp proximal
Gm12204	predicted gene 12204	511 bp downstream
Rr246699	regulatory region 246699	648 bp distal
Rr246700	regulatory region 246700	751 bp proximal
Rr386068	regulatory region 386068	within coordinates
Tssr101302	transcription start site region 101302	1494 bp downstream
Tssr101303	transcription start site region 101303	1474 bp downstream
Tssr101304	transcription start site region 101304	1769 bp upstream
Tssr101305	transcription start site region 101305	1798 bp upstream
Tssr101306	transcription start site region 101306	1891 bp upstream
Tssr101307	transcription start site region 101307	1918 bp upstream
Tssr107840	transcription start site region 107840	1994 bp upstream
Tssr107841	transcription start site region 107841	1947 bp upstream
Tssr107842	transcription start site region 107842	1678 bp upstream
Tssr107843	transcription start site region 107843	1647 bp upstream
Tssr107844	transcription start site region 107844	1628 bp upstream
Ube2b	ubiquitin-conjugating enzyme E2B	1660 bp upstream