rs266085395 SNP Detail

Summary

• ID
  rs266085395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113880681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG AGAGTCAGGG AGGGGACCTT
  Y
  CCTGTGTCAG GTGAGGATTC GGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss639705910	FVB_NJ_2_113875936	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	C	T	T	C	C	C	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266085395					SNP	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	C	C	C	T	T	C	C	C	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639705910	FVB_NJ_2_113875936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113880681 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	277 bp downstream
Tssr19434	transcription start site region 19434	1992 bp downstream
Tssr19435	transcription start site region 19435	1022 bp downstream
Tssr19436	transcription start site region 19436	618 bp downstream
Tssr19437	transcription start site region 19437	85 bp upstream
Tssr19438	transcription start site region 19438	168 bp upstream
Tssr19439	transcription start site region 19439	233 bp upstream
Tssr25667	transcription start site region 25667	1986 bp upstream
Tssr25668	transcription start site region 25668	1959 bp upstream
Tssr25669	transcription start site region 25669	1896 bp upstream
Tssr25670	transcription start site region 25670	958 bp upstream
Tssr25671	transcription start site region 25671	895 bp upstream
Tssr25672	transcription start site region 25672	878 bp upstream
Tssr25673	transcription start site region 25673	847 bp upstream
Tssr25674	transcription start site region 25674	601 bp upstream
Tssr25675	transcription start site region 25675	569 bp upstream
Tssr25676	transcription start site region 25676	546 bp upstream
Tssr25677	transcription start site region 25677	521 bp upstream
Tssr25678	transcription start site region 25678	136 bp downstream
Tssr25679	transcription start site region 25679	145 bp downstream
Tssr25680	transcription start site region 25680	158 bp downstream
Tssr25681	transcription start site region 25681	205 bp downstream
Tssr25682	transcription start site region 25682	287 bp downstream
Tssr25683	transcription start site region 25683	294 bp downstream
Tssr25684	transcription start site region 25684	385 bp downstream
Tssr25685	transcription start site region 25685	755 bp downstream
Tssr25686	transcription start site region 25686	1098 bp downstream
Tssr25687	transcription start site region 25687	1729 bp downstream
Tssr25688	transcription start site region 25688	1793 bp downstream
Tssr25689	transcription start site region 25689	1859 bp downstream
Tssr25690	transcription start site region 25690	1877 bp downstream
Tssr25691	transcription start site region 25691	1999 bp downstream