rs266096971 SNP Detail

Summary

• ID
  rs266096971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36347563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGTTTG ACGGTCACAC
  GCTTCAGATC CCCTGCTCCT TCTCTCTTCT CTTTCCTTTT TCTTTTTGTT TCTTTTTCTT
  TCCAACCCCC AGCAGGAAAG ACGGTTTCTT TTTACCCGCC TGATCTTCTG AGTTTCCCTC
  TTTTCCCTCG GGTCTCTTCA AAGGGACAGG GTGATGGCCC TGGACTGGGG GTGTTTAGTG
  R
  ACCGAGGGCA GAAGCTCAGG CTGCCAGAGT GCGACGAACA AGTTTGGCTT TGCTCTTATT
  GCGAACTAGG GGCACAACCA CACCACCGAT CTGTGGCCCT TTGCACTCAC TACCCAGGCG
  TTGCTCCCTG GCCGGGGTCA CATCCCACAC CTAACCCACA GGCACAGTGG GGCCAACCGT
  AGGCCGGGAA GGCCTCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349247582	MGP_WTSI_1_36365327	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266096971					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349247582	MGP_WTSI_1_36365327	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36347563 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	within coordinates
Gm70585	predicted gene, 70585	858 bp upstream
Rr366864	regulatory region 366864	316 bp downstream
Rr395991	regulatory region 395991	649 bp downstream
Rr409283	regulatory region 409283	869 bp distal
Rr409284	regulatory region 409284	703 bp distal
Rr409285	regulatory region 409285	within coordinates
Tssr6253	transcription start site region 6253	747 bp downstream
Tssr6254	transcription start site region 6254	719 bp downstream
Tssr6255	transcription start site region 6255	703 bp downstream
Tssr6256	transcription start site region 6256	407 bp downstream
Tssr6257	transcription start site region 6257	333 bp downstream
Tssr6258	transcription start site region 6258	201 bp downstream
Tssr11252	transcription start site region 11252	1137 bp downstream