rs266098623 SNP Detail

Summary

• ID
  rs266098623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5913191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATTTGG GATTTGGGCA
  ACTAGCCAGA CTTGGCTCCT GGTCCCCTTC AGAGCCTTTT AAACTCCCAG AGAGCTTCGA
  TCAGGTCCCC ACTGCTCATC AGCATACTGG CGATTTTAAA TTAGCCAGTT GATTAAAGTT
  TAACAAGATC TTCATAAATG TCTTCGCCAT TTCTTTGGAA CATCAATAAT AGGTATCGCC
  R
  CTTCGATTCC TAATACTGTA CACACTGTAA CAGACATCGA ATTTTGGGGG GAAATGGAAA
  ACAGGCACCC CCTCTTCCTT AGCTTGCTTG TGCTTGCTGT GTGAGGCCGG GACTTAGGAT
  GTGTATACTG TGATAGAAGG CACATTGTTT AGTAAGCTTT AGCCCTTTTG CTGGTAGCCT
  GTGCTCAAGA TGGTCTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224090	CHEV_13_5862438	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266098623					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5913191 () rs orientation: forward

Symbol	Name	Function Class
B230207M22Rik	RIKEN cDNA B230207M22 gene	1994 bp upstream
Cpgi5253	CpG island 5253	1256 bp distal
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	621 bp downstream
Rr403559	regulatory region 403559	1348 bp upstream
Rr474542	regulatory region 474542	1700 bp distal
Rr474543	regulatory region 474543	1551 bp distal
Tssr118237	transcription start site region 118237	1691 bp downstream
Tssr118238	transcription start site region 118238	1666 bp downstream
Tssr118239	transcription start site region 118239	1642 bp downstream
Tssr118240	transcription start site region 118240	1628 bp downstream
Tssr118241	transcription start site region 118241	1555 bp downstream
Tssr118242	transcription start site region 118242	1519 bp downstream
Tssr118243	transcription start site region 118243	1317 bp downstream
Tssr118244	transcription start site region 118244	571 bp downstream
Tssr118245	transcription start site region 118245	320 bp downstream
Tssr118246	transcription start site region 118246	623 bp upstream
Tssr118247	transcription start site region 118247	689 bp upstream
Tssr118248	transcription start site region 118248	1294 bp upstream
Tssr118249	transcription start site region 118249	1499 bp upstream
Tssr118250	transcription start site region 118250	1558 bp upstream
Tssr118251	transcription start site region 118251	1578 bp upstream
Tssr118252	transcription start site region 118252	1658 bp upstream
Tssr121317	transcription start site region 121317	1988 bp upstream
Tssr121318	transcription start site region 121318	1911 bp upstream
Tssr121319	transcription start site region 121319	1113 bp downstream
Tssr121320	transcription start site region 121320	1137 bp downstream
Tssr121321	transcription start site region 121321	1160 bp downstream
Tssr121322	transcription start site region 121322	1181 bp downstream