rs266101691 SNP Detail

Summary

• ID
  rs266101691
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11560598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTGGG GCCACCTGCG
  GTGCAGCTTT CCGACTTTGG CTGGCTTCTT TTGAAGTGTC AACTGCCCTG AGATTCTGCT
  ACCTGCCAAG AAGCTGAACC TGTCTTCCTG AGCCATTCCT GAATAAGCAA TCAGCCTGGC
  AACCAAGTGC TGACAGAATG GCTCCAGGCA CCAAGAATGG ACTGGGGGGG GGGGGGGGGG
  A
  GGGGATGGGC CTTCCCCCTT ATAAACACAC TCTCTTAGTA AAGTTGCAGA CCTTGATCAG
  AAAAATTTGT CTTGGCTTCA TTATCTTTTC TCACAGTCTA AGTCTCTTTC AACCCCAGCC
  TGCCTTCCAG AAATACCCGG TTCATGTAGA CCTCGGCCTG GCTTACAACA GGTGGAATGG
  GAGGGGAGCG ACTATGGGGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	SEA/GnJ
ss353097918	MGP_WTSI_2_11477414	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	SEA/GnJ
rs266101691					SNP	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353097918	MGP_WTSI_2_11477414	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11560598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11203	CpG island 11203	1571 bp distal
Pfkfb3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	1716 bp upstream
Rr396770	regulatory region 396770	1591 bp downstream
Tssr16127	transcription start site region 16127	1747 bp downstream
Tssr22641	transcription start site region 22641	1826 bp upstream