rs266101803 SNP Detail

Summary

• ID
  rs266101803
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78071499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATGAAAG CTCTCTGAAG
  TCCTGTTCTT GGGCAAGGGT TGAGGGAAGC AGACCAACCG GTTGGGCATG GCTAAATGGG
  TGAGGACAAG ACACTGTCCA AAAGCCTGCC AACCCATACT GCCCTGAAAT GGATGCTGAC
  AATTCTAAAA TAACCCCTCT GCTCTTCCAA ACCCTGGTAT TGGTTTCACA CCAGCCTGTA
  S
  CAGGGAAGGA ATTCTTGTAA AGCTTGTCCT TTGAGCCTGT GATGGAGCAG TGTCCCAGGA
  GAACCAACAC CTGTCTATAA TAAATGACCC TGGTACTGAG CTAGCATGGG GACTGCATCA
  TCATGTGTCC CCATTGGGTT AAGCAAATCA AGTCTTAATT GCTCAGAGCT GAGAAAGCCC
  TGGGTTTGAT CCCAGCACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383952649	MGP_WTSI_11_77994175	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266101803					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383952649	MGP_WTSI_11_77994175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78071499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3334	CpG island 3334	1272 bp distal
Mir7653	microRNA 7653	1786 bp downstream
Rpl23a	ribosomal protein L23A	262 bp downstream
Rr451900	regulatory region 451900	1901 bp distal
Rr451901	regulatory region 451901	1392 bp distal
Snord4a	small nucleolar RNA, C/D box 4A	1014 bp downstream
Snord42a	small nucleolar RNA, C/D box 42A	629 bp downstream
Tlcd1	TLC domain containing 1	within coordinates
Tssr103233	transcription start site region 103233	1978 bp downstream
Tssr103234	transcription start site region 103234	1901 bp downstream
Tssr103235	transcription start site region 103235	1687 bp downstream
Tssr103236	transcription start site region 103236	1671 bp downstream