rs266103018 SNP Detail

Summary

• ID
  rs266103018
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6017960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGAGTG GTTGGGACTG
  TCCATAAAGC CCTCCCACCT CCACCTTTAT TTTCACACAA ACAAAGATAC ACACAGCCAA
  GTGGTTGGTG GCACACGCCT TCAATCCCTG CACTGGGGAA GCAGAAGCAG ATGATCTCTG
  AGTTTGAGGC CAGCCTGGAT TCCAGGACAG CCAGGGGCCA CACAGAGAAA CCCTGTCTCA
  G
  AAAAAAAAAA AAAAAAATCC ATGAACATAC ATATGCAAAT ATGCATATAC AAAAACAAGC
  ACATAAGCAC ACAATACACA TGTACACAAA ACACACAAAT GTACACACCG GGTGAGGTCA
  CAGCAACACT CAGGGTACTC TTTTGTTGTC ACCTTTCAAA ACTGGGTAGG CCGTGCTACA
  CACGGTTTTG CAGTCACTAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss382290397	MGP_WTSI_11_5967963	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs266103018					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382290397	MGP_WTSI_11_5967963	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6017960 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	1598 bp upstream
Cpgi2551	CpG island 2551	1443 bp distal
Cpgi2552	CpG island 2552	311 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442231	regulatory region 442231	1722 bp distal
Rr442232	regulatory region 442232	75 bp proximal
Rr442233	regulatory region 442233	570 bp proximal
Rr442234	regulatory region 442234	1092 bp proximal
Tssr106689	transcription start site region 106689	1840 bp upstream
Tssr106690	transcription start site region 106690	1823 bp upstream
Tssr106691	transcription start site region 106691	1595 bp upstream
Tssr106692	transcription start site region 106692	1576 bp upstream
Tssr106693	transcription start site region 106693	1549 bp upstream