rs266107085 SNP Detail

Summary

• ID
  rs266107085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156484779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACGTTCCT CCATGACTAG
  GCACATCCTC TCACAAGGAG GCTAGACGAG GCAGCCCTCT GCTATATATG CCCTTTGGTT
  GGTGGCTCAG TTTCTGGGAG CTCCCAAGGT CGGGGTTTCG TCTCTACATT TAAAGCTGCA
  GATGAACACA GCACTCAGAA GCCACGAGTT ATGGCTATTG GCATAAATGA GATAAACACC
  Y
  ACACCATGCT TTAGAGTTCA GAAAGCCTGA TCAGAGGAAT TCTGTCACTC AAGTCTTCCC
  ATAGTCTGTG AAGCAGGACC ATTTTAAGGA AGAGGAAACA GACTTAGAAA TATTGAATGC
  CAGTGCCCAA ATTTCAGGGG CCTTGTGTGA AACACTAACA CAGCTCCCTG TGTTTGCTCA
  GCCCCATGTT AGCACACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404975672	MGP_WTSI_X_154139715	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs266107085					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404975672	MGP_WTSI_X_154139715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156484779 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	778 bp distal
Rr8403	regulatory region 8403	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162442	transcription start site region 162442	706 bp upstream
Tssr162443	transcription start site region 162443	791 bp upstream
Tssr162444	transcription start site region 162444	980 bp upstream
Tssr162445	transcription start site region 162445	1008 bp upstream
Tssr162446	transcription start site region 162446	1049 bp upstream
Tssr162447	transcription start site region 162447	1066 bp upstream
Tssr162448	transcription start site region 162448	1085 bp upstream
Tssr162449	transcription start site region 162449	1104 bp upstream
Tssr162450	transcription start site region 162450	1166 bp upstream