rs266128009 SNP Detail

Summary

• ID
  rs266128009
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24691154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGCCTGC TACTGCGTCC
  CAGTTCCTCA CCTGTGGGGT GGGAGCGCTC TATAGCTGGG GTTTGGATGC CAACCCCGAC
  AGCCTCCGCT ACTCTGCCTC TTTGACATCA CAATTGTCTG TTCTGTTTCA GATGCTCAGT
  ACTGCAGACC CTCATGCACA GTAACAGCCC AACTAAACTT GTCTTTTGTG AACTTGGCCT
  M
  GGTGTCTTAA GTGTGGCCTG CTGAGCAGCT CCCAACACCA TGCTGCTTTC CCGGGAGCTC
  AGAACAGTTG GGTTGTTTGG GGTTTTGTTT TTTTCAAACT AGTGAACAAC ACTGTCAAGT
  GTGAAATTGG ATCTTACGCG TGTGGATTAA TAGTTGTGCT GTCGCAACGG TAAACCCCAC
  TAAAGAAATC TCCTGTCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397856962	MGP_WTSI_17_24609125	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266128009					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397856962	MGP_WTSI_17_24609125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24691154 () rs orientation: forward

Symbol	Name	Function Class
4833447I15Rik	RIKEN cDNA 4833447I15 gene	1939 bp upstream
Bricd5	BRICHOS domain containing 5	1704 bp upstream
Cpgi8720	CpG island 8720	706 bp distal
Mlst8	MTOR associated protein, LST8 homolog (S. cerevisiae)	1371 bp downstream
Pgp	phosphoglycolate phosphatase	within coordinates
Rr405085	regulatory region 405085	1922 bp downstream
Rr523319	regulatory region 523319	1778 bp distal
Rr523320	regulatory region 523320	within coordinates
Rr523321	regulatory region 523321	1214 bp proximal
Tssr143033	transcription start site region 143033	1994 bp downstream
Tssr143034	transcription start site region 143034	1699 bp downstream
Tssr143035	transcription start site region 143035	1677 bp downstream
Tssr143036	transcription start site region 143036	1345 bp downstream
Tssr143037	transcription start site region 143037	1715 bp upstream