rs266143307 SNP Detail

Summary

• ID
  rs266143307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110806404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTTTGTTT TTGTTTTTTT TTGTTTTTTT TTTGAGACAG
  TTTCTGTCTA GTAGGCTTGG CTATCCTGAA ATTTGTTATA CTGATCAGGC TGGCCTCAAA
  Y
  TCATGGAAAT TCAACTGCCT CTGCCTCTAA GTGAGGGGAA TGAATGCGCC CGTCACTCCC
  CTCAAGACCA CATTAATCTT CCTTAAAGGG AGTGACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324159078	CHEV_12_112078180	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266143307					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110806404 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	1059 bp upstream
Cpgi5123	CpG island 5123	420 bp proximal
Mok	MOK protein kinase	within coordinates
Rr387788	regulatory region 387788	1665 bp downstream
Rr403503	regulatory region 403503	864 bp upstream
Rr473004	regulatory region 473004	1947 bp distal
Rr473005	regulatory region 473005	1751 bp distal
Rr473006	regulatory region 473006	1468 bp distal
Rr473007	regulatory region 473007	322 bp proximal
Rr473008	regulatory region 473008	947 bp proximal
Rr473009	regulatory region 473009	1077 bp proximal
Rr473010	regulatory region 473010	1893 bp proximal
Tssr115236	transcription start site region 115236	1051 bp upstream
Tssr117795	transcription start site region 117795	874 bp upstream
Tssr117796	transcription start site region 117796	880 bp downstream
Tssr117797	transcription start site region 117797	935 bp downstream