rs266149860 SNP Detail

Summary

• ID
  rs266149860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAATTTCC TGTTCAGTTG
  AGGCCACTCT ATTCCTACTT TTTTCCACAA GGGACAAAAA TGTTCAATTT ACTCACAAGG
  AGCAGGCTCG ACTGAGTATA GAGACGGCTG GCAAACTCAA ATGGAGTTAA CATCCCCAGA
  AAATGAAACC CAAGCAGGGG TTTGGAAATT TCTTCCACAG AGGTATCATG GTAGTGGCTG
  R
  TTTTGTGTGT CAACTTGATA CAAGCTGGAG TTATCACAGA GAAAGGAGCC TCCCTTGAGG
  AAATGCTTTC ATGAGATCCA GCTGTAAGGC ATTTTCTCAA CTAGTGATCA AGGGGGAAGG
  GCACAGCCCA TTGTGGGTGG TGCCATCCCT GAGCTGGTAG TCCTGGGTTC CATAAGAAAG
  CAAGCTGAAC CTAGTAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025303	MGP_WTSI_X_9015726	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266149860					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025303	MGP_WTSI_X_9015726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304839 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	1947 bp upstream
Tssr160519	transcription start site region 160519	1955 bp downstream
Tssr160520	transcription start site region 160520	1891 bp downstream
Tssr160521	transcription start site region 160521	1837 bp downstream
Tssr160522	transcription start site region 160522	1720 bp downstream
Tssr162882	transcription start site region 162882	1936 bp upstream
Tssr162883	transcription start site region 162883	1546 bp upstream
Tssr162884	transcription start site region 162884	1481 bp upstream
Tssr162885	transcription start site region 162885	1445 bp upstream
Tssr162886	transcription start site region 162886	1425 bp upstream
Tssr162887	transcription start site region 162887	1387 bp upstream
Tssr162888	transcription start site region 162888	1333 bp upstream
Tssr162889	transcription start site region 162889	1315 bp upstream
Tssr162890	transcription start site region 162890	1245 bp upstream
Tssr162891	transcription start site region 162891	1217 bp upstream
Tssr162892	transcription start site region 162892	1162 bp upstream
Tssr162893	transcription start site region 162893	1057 bp upstream
Tssr162894	transcription start site region 162894	1021 bp upstream
Tssr162895	transcription start site region 162895	965 bp upstream
Tssr162896	transcription start site region 162896	938 bp upstream
Tssr162897	transcription start site region 162897	907 bp upstream
Tssr162898	transcription start site region 162898	887 bp upstream
Tssr162899	transcription start site region 162899	747 bp upstream
Tssr162900	transcription start site region 162900	729 bp upstream
Tssr162901	transcription start site region 162901	700 bp upstream
Tssr162902	transcription start site region 162902	617 bp upstream
Tssr162903	transcription start site region 162903	563 bp upstream
Tssr162904	transcription start site region 162904	456 bp upstream
Tssr162905	transcription start site region 162905	382 bp upstream
Tssr162906	transcription start site region 162906	367 bp upstream
Tssr162907	transcription start site region 162907	295 bp upstream
Tssr162908	transcription start site region 162908	264 bp upstream
Tssr162909	transcription start site region 162909	1323 bp downstream
Tssr162910	transcription start site region 162910	1348 bp downstream
Tssr162911	transcription start site region 162911	1402 bp downstream