rs266150676 SNP Detail

Summary

• ID
  rs266150676
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121124496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGATTA AGGGTTAAAG
  GCTGTCACAA ATGGTAGCTT AGAGATGGGG AGGGAAGGAA AACCAACTGT GACCTGGAAT
  CACCGGGCCA AGGTGTGCTA TGGGGGTGTA TGGCTGAGAA CAAGGGTGGG CTCTGATCTC
  AGTTGGAGGA TGATATTTTG TTCTCAATCC CAATGTCTAC TAAGGTTGTG CCCCCCCCCC
  S
  CCGCCAAACA CTGAGAGATC CCTAAAAAGC ATAGAGGAGT CAGGAGGCTG GAGGCAGGGT
  GAAATAAGAG TGATGACATT GCAGAAGGTA GAGTATTACT CCATGCTGCT GAGCTGGTTT
  ACATCTATGT GTGTGTCTAT GCCGATGGCC GCTCCTATTC AAATAGGGAT ATGGCATGTT
  GCTACTTTGC ATCCTGTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss355464336	MGP_WTSI_2_121119751	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs266150676					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355464336	MGP_WTSI_2_121119751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121124496 () rs orientation: forward

Symbol	Name	Function Class
Gm14978	predicted gene 14978	within coordinates
Map1a	microtubule-associated protein 1 A	Intron
Rr373768	regulatory region 373768	within coordinates
Rr563798	regulatory region 563798	1179 bp distal
Rr563799	regulatory region 563799	949 bp proximal
Rr563800	regulatory region 563800	1450 bp proximal
Rr563801	regulatory region 563801	1983 bp proximal
Tssr19740	transcription start site region 19740	1422 bp upstream