rs266154182 SNP Detail

Summary

• ID
  rs266154182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104422979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGCAAT CATTGAAGTT
  TCTTTCAATC TACTACAAAC AAGCAAAAAC AAACAAACAA ACAAACAAAC AAAAACAACT
  AAAACACCCC CCCCCCCCGC CCCCTCACTT GTGGCTTTCC CTGGTGCAGT TTAAAACACC
  ATCTAGTCTC TCATCTGGAA ATAATGCAAT ACTCCCCACC CCCTTTTCCT TTTATAGGTC
  Y
  ACATAACCTG AAGTCGATAA TCACATGGAA AATGTGCAGG TCTCAATTTC GTTTCCTTTT
  TATTCTTTTG GTGGTATTTT CACTTGTTGA AGTATATATT CAACACACAG GCGTTTTGTT
  CATGTCTTTA AGTCTTGAAA TTTTGCTCTA CTGATCTGAC TCCTTACATG ACAAAATTTA
  TGAATAACTT TTAAATATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514938	CHEV_13_105076551	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266154182					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104422979 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	1364 bp upstream
Gm60746	predicted gene, 60746	43 bp downstream
Gm60750	predicted gene, 60750	629 bp upstream
Rr369763	regulatory region 369763	340 bp upstream
Rr403946	regulatory region 403946	153 bp downstream
Rr485428	regulatory region 485428	862 bp distal
Rr485429	regulatory region 485429	1367 bp distal
Rr485430	regulatory region 485430	139 bp proximal
Rr485431	regulatory region 485431	734 bp proximal
Rr485432	regulatory region 485432	1413 bp proximal
Tssr120915	transcription start site region 120915	562 bp upstream
Tssr120916	transcription start site region 120916	618 bp upstream
Tssr120917	transcription start site region 120917	647 bp upstream
Tssr120918	transcription start site region 120918	665 bp upstream
Tssr120919	transcription start site region 120919	886 bp upstream
Tssr120920	transcription start site region 120920	981 bp upstream
Tssr120921	transcription start site region 120921	1020 bp upstream
Tssr120922	transcription start site region 120922	1037 bp upstream
Tssr120923	transcription start site region 120923	1384 bp upstream
Tssr120924	transcription start site region 120924	1431 bp upstream
Tssr120925	transcription start site region 120925	1461 bp upstream