rs266166003 SNP Detail

Summary

• ID
  rs266166003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118376645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCGAAGC AGGCCTCATC
  CAGCTTCTCT GACTCCCGCC AGAACTGCTT TTCCAGAAGT GCCCTATGGG CAGTTCCCTC
  TGAGAGTAAG TGCAGCGCGC TCCTCAGGGC TCCTCGGTCT GCTCCCGCAG ACACAGCAGG
  ATGACCTCTG AGCCTTTACC CTCCCTCCAC AGGCCAGTGC ACTAAAAGAA GAAAACAGAC
  Y
  GAGTGTCTAA TCCTGCCCTC TTGCCAGAGG AGGGCATATT TCTCATAAAA CAAACCCTTG
  AAGCCCACAA ATGAAGGGGT CTTGTCTGAT TTAGCCTTAG TAACAACCCC TCTCCTGGCA
  CTGAGCCCAG ATAGGCCCAA CCTCTTTCTC CAGTTCCCCT TCCCAGCACA GAAAGTCCCA
  AATGGCAACT GGAAGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355412580	MGP_WTSI_2_118371900	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266166003					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355412580	MGP_WTSI_2_118371900	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118376645 () rs orientation: forward

Symbol	Name	Function Class
Bmf	BCL2 modifying factor	within coordinates
Cpgi12082	CpG island 12082	1479 bp distal
Rr397207	regulatory region 397207	102 bp downstream
Rr397208	regulatory region 397208	339 bp upstream
Rr563263	regulatory region 563263	20 bp proximal
Rr563264	regulatory region 563264	853 bp proximal
Rr563265	regulatory region 563265	1385 bp proximal
Tssr19559	transcription start site region 19559	579 bp upstream
Tssr25777	transcription start site region 25777	995 bp upstream
Tssr25778	transcription start site region 25778	820 bp upstream
Tssr25779	transcription start site region 25779	854 bp downstream
Tssr25780	transcription start site region 25780	1377 bp downstream