rs266180153 SNP Detail

Summary

• ID
  rs266180153
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:9166232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATAAG TTTTGTCTTT
  TAAATTTCAA TTTAATAAAC ATTTATTGTT GAATATACAT ATGAGAGTTG TCATGCAGTA
  TTTGTCTTTC TGAGCCTGCA TTATTTTGCT TACCATAATG ATGACTAGTC CCATCCCCTT
  TTCTGCAAAT GTTATGATTT TATTCTTTTT GTATAATTTA GTGGTTGTGT AGTAATCTGA
  K
  AGTTTTAATC TTCATTTCCT GATGACTAAC CAATTCGATT TTATTTTCAC ATTTTTAGTT
  GCCAGTGGGT TGGCGCCCTC TCTCTCTCTG TGTGTACCTT TAGTCTTTTT TGCGTTTTTA
  AATTTGGATT ATATAGCCTG AGAATTATTA TAATGATTTG ATGCTTTTAG AGAAGGCCCA
  AATTTGGGTT CCAGCACCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss403023806	MGP_WTSI_X_8877119	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	T	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs266180153					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	T	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403023806	MGP_WTSI_X_8877119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9166232 () rs orientation: forward

Symbol	Name	Function Class
DXMit136	DNA segment, Chr X, Massachusetts Institute of Technology 136	427 bp proximal
Rr689856	regulatory region 689856	1018 bp distal
Xk	X-linked Kx blood group	Intron