rs266182579 SNP Detail

Summary

• ID
  rs266182579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126777006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATAAAA TCAAATTCAC
  TTCACCAAAA TAAAAACCTC TGTTCTTTGG AAGATATGTT TTTTAAATAT TTATTTGTGT
  GTGTACTTTC ATAGACACCT ACATGAGCTT ATGTCTACTA TGTGTGTGCA GGTGTCTACA
  GAGATCAAAA GAGGACACCA GATCCCAGAA CTGGAGTTCT AGGTAATTAT TGATTATAAG
  M
  AGCCATGTGG ATGCTGGGTA TTGACCCCAG GTCCATCTCC TGAAGAGCAG CCAGTGCTCT
  TAACCACTGA GCCATCTCTC CATCCCCTGG AAGATATTCT TAAAGGAATA AAGACCACTG
  TAGACTGGGA GAAGACAATC ATAAAGCATC TATATATAAA CAAACACACA CACACACATA
  TATAAACATA TATGTATTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320498591	CHEV_2_126760822	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266182579					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126777006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1682 bp distal
Gm75308	predicted gene, 75308	145 bp downstream
Rr373816	regulatory region 373816	1945 bp upstream
Rr564422	regulatory region 564422	1999 bp distal
Rr564424	regulatory region 564424	1862 bp distal
Rr564425	regulatory region 564425	1361 bp distal
Sppl2a	signal peptide peptidase like 2A	1851 bp upstream
Tssr26085	transcription start site region 26085	1996 bp upstream
Tssr26086	transcription start site region 26086	1953 bp upstream
Tssr26087	transcription start site region 26087	1922 bp upstream
Tssr26088	transcription start site region 26088	1859 bp upstream
Tssr26089	transcription start site region 26089	1845 bp upstream
Tssr26090	transcription start site region 26090	1206 bp upstream