rs266212602 SNP Detail

Summary

• ID
  rs266212602
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131645375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTAATGAG ATCTGACGCC
  CTCTTCTGGG GTGTCTGAAG ACAGCTACAG TGTACTCATA TATAATAAAT AAATAAATCT
  TTAAAAAAAA TACTGTCTTC TTATGTTGTT CACGAGCAGG CATAGATGTG AGCAGGGCAA
  GGCTGGGTAC ACCTGCCACA GAAGCTGGTT CCACACCGAT AAGGGTGAAA GCCCACCTCA
  C
  AGACTGTACA AAGAACTGGG TAGACCAGAG AGAGGAGCCT AGTCAACTTC CATCCAAGTA
  CGGCTTGGGG AGACGACTCT ATTGTCACAA GGGCCTTGTT CCCTCAGGGG CTCCAGGGTC
  ACCAAGTTCT GCCTTCTCCG CTCTAGGCTC TAGAGAGTCA CAGAATCCAC ATTAAATTTT
  CCTGTCAGCA GCCCAAGGAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329083	CHEV_4_131473979	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266212602					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131645375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14946	CpG island 14946	1301 bp distal
Cpgi14947	CpG island 14947	1647 bp proximal
Gm12992	predicted gene 12992	within coordinates
Gm68339	predicted gene, 68339	1673 bp downstream
Rr85750	regulatory region 85750	775 bp distal
Rr85751	regulatory region 85751	175 bp distal
Rr100127	regulatory region 100127	1774 bp distal
Rr100128	regulatory region 100128	425 bp proximal