rs266215604 SNP Detail

Summary

• ID
  rs266215604
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54798988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTAGGGT CAGGGTGTAT
  AAACGAGGCT GGCAATGGCT TAACCCGGTA TCTGACTGGA ACCATGTCTC CTTAATGTCT
  CTATCCTGTC TTTTCTTCTC AGTGAGGGCA AACAGAAGCC TAAGGGCCAA AGCCTGATGG
  CCCAAGGGCA AACACTTTGG GGCCAAGCAG ACCCAGGCCA CTTGGCTGGC ACCTGCAGGA
  S
  AGTTCCTGGG CTGGGTGATG GCGCTGCCTC TAATTCCAGG GGTCCCAAGG GAACTGGCGA
  GCTGGCCAGG GCCTCCCCTG GGCTCCTGAA TTCCCAGATG AGAGGGATGT GAATACTGCC
  CTCCAATCAC CCGAAGAAAG TCCTCAGCCA CCTGCCCAGG GGCTAAGAGA CCCAGGCAGC
  AGGTGTGACT ACCCATATAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428883	MGP_WTSI_11_54721664	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266215604					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428883	MGP_WTSI_11_54721664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54798988 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tssr3502	transcription start site region 3502	1479 bp downstream
Tssr3503	transcription start site region 3503	1953 bp upstream
Tssr101551	transcription start site region 101551	1897 bp downstream
Tssr101552	transcription start site region 101552	1834 bp downstream
Tssr101553	transcription start site region 101553	1381 bp downstream
Tssr101554	transcription start site region 101554	1369 bp downstream
Tssr101555	transcription start site region 101555	1327 bp downstream
Tssr101556	transcription start site region 101556	1032 bp downstream
Tssr101557	transcription start site region 101557	1002 bp downstream
Tssr101558	transcription start site region 101558	985 bp downstream
Tssr101559	transcription start site region 101559	962 bp downstream
Tssr101560	transcription start site region 101560	916 bp downstream
Tssr101561	transcription start site region 101561	373 bp upstream
Tssr101562	transcription start site region 101562	397 bp upstream
Tssr101563	transcription start site region 101563	447 bp upstream
Tssr101564	transcription start site region 101564	461 bp upstream
Tssr101565	transcription start site region 101565	890 bp upstream
Tssr101566	transcription start site region 101566	940 bp upstream
Tssr101567	transcription start site region 101567	1301 bp upstream
Tssr101568	transcription start site region 101568	1377 bp upstream
Tssr101569	transcription start site region 101569	1460 bp upstream
Tssr101570	transcription start site region 101570	1482 bp upstream
Tssr101571	transcription start site region 101571	1536 bp upstream
Tssr101572	transcription start site region 101572	1631 bp upstream
Tssr101573	transcription start site region 101573	1668 bp upstream
Tssr101574	transcription start site region 101574	1682 bp upstream
Tssr101575	transcription start site region 101575	1730 bp upstream
Tssr101576	transcription start site region 101576	1744 bp upstream
Tssr101577	transcription start site region 101577	1773 bp upstream
Tssr101578	transcription start site region 101578	1856 bp upstream
Tssr108006	transcription start site region 108006	877 bp upstream
Tssr108007	transcription start site region 108007	402 bp downstream
Tssr108008	transcription start site region 108008	462 bp downstream
Tssr108009	transcription start site region 108009	478 bp downstream
Tssr108010	transcription start site region 108010	899 bp downstream
Tssr108011	transcription start site region 108011	1495 bp downstream
Tssr108012	transcription start site region 108012	1529 bp downstream
Tssr108013	transcription start site region 108013	1623 bp downstream
Tssr108014	transcription start site region 108014	1630 bp downstream
Tssr108015	transcription start site region 108015	1713 bp downstream
Tssr108016	transcription start site region 108016	1765 bp downstream
Tssr108017	transcription start site region 108017	1816 bp downstream
Tssr108018	transcription start site region 108018	1831 bp downstream
Tssr108019	transcription start site region 108019	1867 bp downstream
Tssr108020	transcription start site region 108020	1923 bp downstream
Tssr108021	transcription start site region 108021	1943 bp downstream
Tssr108022	transcription start site region 108022	1954 bp downstream