rs266215770 SNP Detail

Summary

• ID
  rs266215770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146789382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTA AAAAGATAAC AATTTGAAGA
  Y
  CAGCCTTGAT ATGTGTCACA GCGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322083551	CHEV_6_146836406	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266215770					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146789382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18173	CpG island 18173	142 bp proximal
Gm66444	predicted gene, 66444	118 bp downstream
Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	603 bp upstream
Rr139438	regulatory region 139438	1782 bp distal
Rr145955	regulatory region 145955	within coordinates
Tssr59600	transcription start site region 59600	597 bp upstream
Tssr59601	transcription start site region 59601	709 bp upstream
Tssr59602	transcription start site region 59602	748 bp upstream