rs266239047 SNP Detail

Summary

• ID
  rs266239047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122827386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAACGG CACCAGGAAG
  CCCACCACCA GCCTTGTGAT GGTTATTGCC ATCAGCGGTG TCGGCACATG ATTGTCATAC
  GTGAATTGGT CAACATAATC CCCCTGGAAA TCATAGGGGT ATAAATGACC ACTAGAAGCA
  GTAGGGAAAA GTTCTGTGTG AGCAGAGAGA AAAGCGTCAG CGTTCAGTGT ATTGGATTTA
  Y
  GATCTTCAAC AGGAAACCCG CTGGGTACGG CGGCTGTGAG GACATTAGGA GGCTTTCCAC
  CATAATGGGG TTGTTGGTTT GCTGAATCTA GAGAGAATGA GTCTTCAGGA GATGTTAGGA
  ATGGCTGTGA CTGGAGGGCA GTGGTAACTG TCCAAAAGTA ATCCCTTGCC TGTACAGAGG
  AAGGAGCTGA CCTGTCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914788	MGP_WTSI_6_122800445	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266239047					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914788	MGP_WTSI_6_122800445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122827386 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58711	transcription start site region 58711	30 bp upstream
Tssr58712	transcription start site region 58712	148 bp upstream
Tssr58713	transcription start site region 58713	204 bp upstream
Tssr62973	transcription start site region 62973	1987 bp upstream
Tssr62974	transcription start site region 62974	1901 bp upstream
Tssr62975	transcription start site region 62975	1816 bp upstream
Tssr62976	transcription start site region 62976	1727 bp upstream
Tssr62977	transcription start site region 62977	1669 bp upstream
Tssr62978	transcription start site region 62978	1615 bp upstream
Tssr62979	transcription start site region 62979	1582 bp upstream
Tssr62980	transcription start site region 62980	1566 bp upstream
Tssr62981	transcription start site region 62981	1547 bp upstream
Tssr62982	transcription start site region 62982	1388 bp upstream
Tssr62983	transcription start site region 62983	930 bp upstream
Tssr62984	transcription start site region 62984	834 bp upstream
Tssr62985	transcription start site region 62985	795 bp upstream
Tssr62986	transcription start site region 62986	500 bp upstream
Tssr62987	transcription start site region 62987	374 bp upstream
Tssr62988	transcription start site region 62988	308 bp upstream
Tssr62989	transcription start site region 62989	148 bp upstream
Tssr62990	transcription start site region 62990	95 bp upstream
Tssr62991	transcription start site region 62991	66 bp upstream
Tssr62992	transcription start site region 62992	16 bp upstream
Tssr62993	transcription start site region 62993	32 bp downstream
Tssr62994	transcription start site region 62994	138 bp downstream
Tssr62995	transcription start site region 62995	255 bp downstream
Tssr62996	transcription start site region 62996	315 bp downstream
Tssr62997	transcription start site region 62997	457 bp downstream
Tssr62998	transcription start site region 62998	512 bp downstream
Tssr62999	transcription start site region 62999	583 bp downstream
Tssr63000	transcription start site region 63000	640 bp downstream
Tssr63001	transcription start site region 63001	663 bp downstream