rs266245856 SNP Detail

Summary

• ID
  rs266245856
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68915242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTTCCT TCAGTTCCCT
  GGCCCACTCC ATTCCTAGGG TGCTTTCCTT TTCTTAATAA ACTGCTTTTA TTTCTAAAGA
  GAAAGAAAGA AAAAGTGTTT ATCTTCTAAT GAAAACTTTT AATGATACCT TTGATTTTTA
  TTACAAATTA AATTATGGAG TAGTTTAAAA TTAGTATTAA GTGTGACTAT TTAAATTTTT
  W
  AAAATTTACT TTTATGCAGC GCTTTTCCTG TATTATTGGA CCAAATGGCA GTGGAAAATC
  CAATGTTATT GATTCCATGC TTTTTGTGTT TGGCTATCGA GCACAAAAAA TAAGGTCTAA
  AAAGCTATCG GTACTGATAC ATAATTCTGA TGAACACAAG GATATTCAGA GTTGTACTGT
  AGAAGTTCAT TTTCAAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313346	MGP_WTSI_3_68811831	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266245856					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313346	MGP_WTSI_3_68811831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68915242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	1422 bp distal
Mir15b	microRNA 15b	1863 bp upstream
Mir16-2	microRNA 16-2	1993 bp upstream
Mirc10	microRNA cluster 10, including Mir15b through Mir16-2	1863 bp proximal
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29513	transcription start site region 29513	1963 bp downstream
Tssr29514	transcription start site region 29514	1837 bp downstream
Tssr29515	transcription start site region 29515	1573 bp upstream
Tssr29516	transcription start site region 29516	1611 bp upstream
Tssr33522	transcription start site region 33522	1480 bp upstream