rs266250897 SNP Detail

Summary

• ID
  rs266250897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCCTTAT AATTAATGAA
  ATACTTGCCT ACTCCATTAG CCTGCGAATA CTATGAAATC AAAAGCTGCA CTACTCAGTT
  CAACTCAACA AATAAGCACC TACTATGTGC TCACCAGAAG ATTTCTGCCT TCAAAATGTT
  CAAAATCTAC TAGAAGAGAT AGGATGCTCC AAGGCAAGTT CTCTATGCCA GTGAGCTCTC
  R
  GGGGCGGGGG TGGGGGTGGG GGTGGGCATA GGGGAAATAC TTGAAAGAAA ACACAGTGGA
  GGACCATAAG GTTGGACTGG ACTCTGAAGA ATGGGCAGGT GGATCCTGTG AGTGGATGAT
  GCACGTGCTC AGATCATGCA TTCCCACCCC ACAGGTCTAG CCTTGGACCG ATGTCTCCTG
  CTTCTGGACA GTGCTCGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352401051	MGP_WTSI_1_174141707	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266250897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352401051	MGP_WTSI_1_174141707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039143 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1231 bp downstream
Tssr15168	transcription start site region 15168	1450 bp upstream
Tssr15169	transcription start site region 15169	1372 bp upstream
Tssr15170	transcription start site region 15170	1350 bp upstream
Tssr15171	transcription start site region 15171	1332 bp upstream
Tssr15172	transcription start site region 15172	1251 bp upstream
Tssr15173	transcription start site region 15173	1157 bp upstream
Tssr15174	transcription start site region 15174	1103 bp upstream
Tssr15175	transcription start site region 15175	407 bp downstream
Tssr15176	transcription start site region 15176	1488 bp downstream
Tssr15177	transcription start site region 15177	1542 bp downstream
Tssr15178	transcription start site region 15178	1566 bp downstream
Tssr15179	transcription start site region 15179	1588 bp downstream
Tssr15180	transcription start site region 15180	1793 bp downstream