rs26823016 SNP Detail

Summary

• ID
  rs26823016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32247503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAAAAGCA TAATTGGATG CCTACACACA CACATATGTC
  TTCTGAGTCT GGGCAGCAGT CCCTCCCAAG CCCTCCACTG ACAGCCATGT GTCTTCTCCT
  Y
  GAGCCAAAGA AGCCAAAGAT CGTCTTTGGA GGGTCCTTAT CACAGGCCCT CTCAGGGAGT
  GAACTCCTTA ATGTCGCTGG TACTCCAGTG TGGGATCTAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37057536	NES08355955	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	T		T	T	T	T	T	T	T
ss37057566	NES08356071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26823016					SNP	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37057536	NES08355955	PERLEGEN	MM_PANEL	f	SNP	C/T
ss37057566	NES08356071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32247503 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	1537 bp downstream
Gm74521	predicted gene, 74521	197 bp upstream
Hba-a2	hemoglobin alpha, adult chain 2	205 bp downstream
Rr444569	regulatory region 444569	1004 bp distal
Rr444570	regulatory region 444570	within coordinates
Rr444571	regulatory region 444571	1563 bp proximal
Tssr100842	transcription start site region 100842	1011 bp downstream
Tssr100843	transcription start site region 100843	344 bp downstream
Tssr100844	transcription start site region 100844	29 bp upstream