rs26823153 SNP Detail

Summary

• ID
  rs26823153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:32201824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTGCTGC CTTCAGCACC CAAGGCTATG CAGGGACACG
  CTGAGAAAGC TGCCACCTAG AATGAGGCAG AGTTTAATGG GAATGCTAAC AAAAAGTGTA
  Y
  TTACAGCTAG GTATGGTAGC TTACCCCTAT AATGCCATCA CTTGGGAGGT AGAAGGATCA
  AGCTCAAGCC TACATAGGAA GGTTAAGGAC AGCCTGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37057680	NES08350325	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	T	C	C	T	T	C	T	C	T	T
ss131932953	ENSMUSSNP3683417	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26823153					SNP	T	T	C	C	T	T	T	C	C	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37057680	NES08350325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32201824 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nprl3	nitrogen permease regulator-like 3			Intron
				Noncoding-Transcript-Variant
Rr349	regulatory region 349			455 bp distal
Rr350	regulatory region 350			within coordinates
Rr923	regulatory region 923			460 bp distal
Rr1084	regulatory region 1084			within coordinates
Rr444552	regulatory region 444552			6 bp distal