rs26823157 SNP Detail

Summary

• ID
  rs26823157
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32201444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTTACC TTAAGTCAAA
  ATCTTACCCT GACAACACCT TGTACACCTG CAGTTGGGAA GACTTTCTAC ATTCTCAATA
  AGCCACACAC TTACAAAGAG AAGCAAAACC TGGGCAGACT TGCAGCCACC AGGCCGTCTG
  CCGTGACACT TCATGCTCAG GGCATCTCCT TGACCATGTC CTAAAAGGGC TGATTTACAA
  W
  AGCCTCAATA CAAAGTACAC ATTCACAAGA GTCCGTATAA AAATACTCCA CTAGAAAGCG
  GGGAGAGAAT ACTCTTAGAC ACAAACTTTT CCTCTGACTA ATGACTGAAG TCACAGTGAG
  TCATTCTCTC TGCTGGAGGT GCCACTAGCT GAGGTACAAA AGCATCCCTA TAGCAGCTGG
  GGGGGACCAA CTGTTTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37057684	NES08350321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs26823157					SNP	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37057684	NES08350321	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32201444 () rs orientation: forward

Symbol	Name	Function Class
Nprl3	nitrogen permease regulator-like 3	within coordinates
Rr349	regulatory region 349	75 bp distal
Rr350	regulatory region 350	within coordinates
Rr923	regulatory region 923	80 bp distal
Rr1084	regulatory region 1084	within coordinates
Rr444552	regulatory region 444552	within coordinates