rs26823164 SNP Detail

Summary

• ID
  rs26823164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32200122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGA GCTCAGCAGG CTGCTGCACT
  Y
  ACCATCAGCC ATAGCAGACA CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37057691	NES08350312	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	C		C		C	C		C	C		C
ss38787857	mCV23784210	ABI	CRAMUS_MOUSE	f	SNP		T	C				T		C
ss131932914	ENSMUSSNP5771502	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss323630227	CHEV_11_32150122	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs26823164					SNP	T	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37057691	NES08350312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32200122 () rs orientation: forward

Symbol	Name	Function Class
Nprl3	nitrogen permease regulator-like 3	within coordinates
Rr349	regulatory region 349	682 bp proximal
Rr350	regulatory region 350	within coordinates
Rr923	regulatory region 923	687 bp proximal
Rr1084	regulatory region 1084	330 bp proximal
Rr444551	regulatory region 444551	1485 bp distal
Rr444552	regulatory region 444552	202 bp proximal