rs26823166 SNP Detail

Summary

• ID
  rs26823166
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32199388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAATTTCT GTTCCTCATT CTTTCTTCTG TAGCTGATAA
  GCCTAGGAGA AGGAAGCCGA GGTCATTCCC AGTTTCTTTC CAATGTAGTC CTCTGGGCAC
  K
  CTAAAGGTTA CACAGTGTCT ATCAGCACAA ATTATTTTTT GATTAGTTAG GGGACAGTTA
  GGTTCTTCAG CTTTTAAATT ATAAGTTCCA AGTATGGAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37057693	NES08350310	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	T	T		G	G	T	T	G	T	G	T	T
ss38738794	mCV23784229	ABI	CRAMUS_MOUSE	f	SNP		G					T		G
ss131932903	ENSMUSSNP4880203	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26823166					SNP	T	G	G	T	T	T	T	G	G	T	T	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37057693	NES08350310	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32199388 () rs orientation: forward

Symbol	Name	Function Class
Nprl3	nitrogen permease regulator-like 3	within coordinates
Rr349	regulatory region 349	1416 bp proximal
Rr350	regulatory region 350	within coordinates
Rr923	regulatory region 923	1421 bp proximal
Rr1084	regulatory region 1084	1064 bp proximal
Rr444549	regulatory region 444549	1948 bp distal
Rr444551	regulatory region 444551	751 bp distal
Rr444552	regulatory region 444552	936 bp proximal