rs26823298 SNP Detail

Summary

• ID
  rs26823298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28535845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GTACTCAGGC CCCATGGAGA
  Y
  GGCTTGCTTT TAGGTGCTTC ATCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37064520	NES08357872	PERLEGEN	MM_PANEL2	f	SNP		T	C	C	C	T	T	C	C		T	C	C	T		T
ss131877134	ENSMUSSNP4658506	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					T
ss323608763	CHEV_11_28485845	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26823298					SNP	C	T	C	C	C	T	T	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37064520	NES08357872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28535845 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	1521 bp upstream
Cpgi2667	CpG island 2667	1410 bp distal
Rr233134	regulatory region 233134	1245 bp distal
Rr246448	regulatory region 246448	1244 bp distal
Tssr107205	transcription start site region 107205	1740 bp upstream
Tssr107206	transcription start site region 107206	1616 bp upstream
Tssr107207	transcription start site region 107207	1536 bp upstream