rs26823299 SNP Detail

Summary

• ID
  rs26823299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28535622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTCATA TTTGCAACCC
  AAAAATGTCT TCCTTGGTAC GCTGAAGCAC TGTAATCCTA GGAGAAAGTG GCTCCTCTCT
  CAATTTTCAG CAAAGGGAGA AGTCTGTTAA AGGTTTCTTT CAACACACCC AGAGACCAAG
  ACCCAGCTAG TCCTCCAATG CTTTCCACTG CTTACTTCAG CTTACAACCC TCCCAACCTT
  Y
  CACTTCAGAT AACTCAGTCC TTCCCCTGTA TTAATGGTCT TGACTATGTC TGGTGTAATT
  TTCTTGACAT TTCCTTGTCT CTCCGATGCA CAGGTTTTTA AGAGAATGCT GCATAACAGT
  TTGGAAATGG AAGAGAATAC ACAAGATGGA AAATTGTGAA TGTCGTTCCA TGTTCTTGCT
  TTTGATGAAT CTTGAGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37064521	NES08357871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26823299					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37064521	NES08357871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28535622 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	1298 bp upstream
Cpgi2667	CpG island 2667	1187 bp distal
Rr233134	regulatory region 233134	1022 bp distal
Rr246448	regulatory region 246448	1021 bp distal
Rr385862	regulatory region 385862	1847 bp downstream
Tssr107205	transcription start site region 107205	1517 bp upstream
Tssr107206	transcription start site region 107206	1393 bp upstream
Tssr107207	transcription start site region 107207	1313 bp upstream