rs26823306 SNP Detail

Summary

• ID
  rs26823306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28535100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG TCACAGTGAG GGTCTCAATC
  M
  GTTCCCTCTA ATGAGGCAGT GCATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37064528	NES08357864	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A		C
ss323608758	CHEV_11_28485100	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs26823306					SNP	A	A	A	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37064528	NES08357864	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28535100 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	776 bp upstream
Cpgi2667	CpG island 2667	665 bp distal
Rr233134	regulatory region 233134	500 bp distal
Rr246448	regulatory region 246448	499 bp distal
Rr385862	regulatory region 385862	1325 bp downstream
Tssr107205	transcription start site region 107205	995 bp upstream
Tssr107206	transcription start site region 107206	871 bp upstream
Tssr107207	transcription start site region 107207	791 bp upstream