GATGCGGGTG GGGCTGGAGT CAAGAGCAGG TGCCGCCAGG GCGTTGAGAG GCTCGCGCGC GCCACCAAGT GACTATAGGC TGTCCCCTCC CCTCCATCTC TGCAAGTCAG ACTAGTTCAG GAGAGGCAGC CTGCTGACCA AAATGAGCGA CATTCAGTTC TTGGAAGAAT TGGATGCAGA AATTTCGAGA GCAAGACATA Y GACTAACTAG CTAGATGCAC TTCGGAGAAC TGGAGAAGAG GGAAGAAAGC CTGTACCGGA GGTCACAAAA TCCTCAAGTT CAGGAAATCA GGGCAAAGAG CTGTTAAATT CAGCCCTTTG GGGACCTCCA CCCCATTCCC AGGCCTTTGT TTTCTCTAAA ATCTCACCAC CTTATGAAGA AGCTTCAGGT GGAAGTACTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37064530 | NES08357862 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | C | ||
ss323608756 | CHEV_11_28484508 | CHEVERUD | SCREENING_POP | f | SNP | C | C | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs26823308 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37064530 | NES08357862 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr11:28534508 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ccdc85a | coiled-coil domain containing 85A | 184 bp upstream | ||||||
Cpgi2667 | CpG island 2667 | 73 bp distal | ||||||
Rr233134 | regulatory region 233134 | within coordinates | ||||||
Rr246448 | regulatory region 246448 | within coordinates | ||||||
Rr385862 | regulatory region 385862 | 733 bp downstream | ||||||
Tssr107205 | transcription start site region 107205 | 403 bp upstream | ||||||
Tssr107206 | transcription start site region 107206 | 279 bp upstream | ||||||
Tssr107207 | transcription start site region 107207 | 199 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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