rs26823309 SNP Detail

Summary

• ID
  rs26823309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28534181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGATCCTA AACTGTTCTG GGAAGCCTTG GGTTTTCAGA
  GCCCAGAAAA GGATGGGCGG GGATTGGGGA GCAGCAGCAG GGAGGAAGCT GGCTCCCGGG
  R
  CGCCCGCATT CCGCAACACC TTCTGCAAAG GCCAAACCCG AATGGCACTC AGCTGCCCAA
  CCGGACCCTG AGCTCCTGGT GCTCTGCTGC TAGGGACGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37064531	NES08357861	PERLEGEN	MM_PANEL2	f	SNP		A	G	G	G	A		A	G	G	A	G	G	A	G
ss38765005	mCV23805084	ABI	CRAMUS_MOUSE	f	SNP	G	A					G	A
ss131877095	ENSMUSSNP1797651	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26823309					SNP	G	A	G	G	G	A	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37064531	NES08357861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28534181 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	within coordinates
Cpgi2667	CpG island 2667	within coordinates
Rr233134	regulatory region 233134	220 bp proximal
Rr246448	regulatory region 246448	within coordinates
Rr385862	regulatory region 385862	406 bp downstream
Tssr107205	transcription start site region 107205	76 bp upstream
Tssr107206	transcription start site region 107206	38 bp downstream
Tssr107207	transcription start site region 107207	79 bp downstream