AGGCT TCTCTCCTGT TCTTAGCAGT K GTGTCCTTTC TTTGCCCTCT GCTCA K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37064538 | NES08357854 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | T | G | G | G | G | G | G | G | G | G | |||||
ss38778207 | mCV23805391 | ABI | CRAMUS_MOUSE | f | SNP | T | T | G | T | G | |||||||||||||
ss131877065 | ENSMUSSNP5697690 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | G | G | |||||||||||||||
ss323608751 | CHEV_11_28482816 | CHEVERUD | SCREENING_POP | f | SNP | G | G | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs26823316 | SNP | T | T | G | G | G | T | G | T | G | G | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37064538 | NES08357854 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr11:28532816 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ccdc85a | coiled-coil domain containing 85A | within coordinates | ||||||
Cpgi2667 | CpG island 2667 | 331 bp proximal | ||||||
Rr233134 | regulatory region 233134 | 1585 bp proximal | ||||||
Rr246448 | regulatory region 246448 | within coordinates | ||||||
Rr385862 | regulatory region 385862 | within coordinates | ||||||
Tssr107205 | transcription start site region 107205 | 1258 bp downstream | ||||||
Tssr107206 | transcription start site region 107206 | 1403 bp downstream | ||||||
Tssr107207 | transcription start site region 107207 | 1444 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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