rs26823319 SNP Detail

Summary

• ID
  rs26823319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28532346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCCATC TCTGCAGGGG
  CTCACACATG GGTGAGTCTG GAGCATCTGC CCATCTGTCC GTTCACAATC CTCAGAATCC
  CAGAGCTGGA GCGCTGGAGC AATTAAGGAG TGGTGCCTAT TCACTGAGAA TCCAAGGGGG
  AAAGGAGAGA CACTGGAACA TTTTGTGCTT GGAGGGAATT TGGTCCCTGG GGTTCCTATG
  Y
  TGATTTCGTT TGTGTCTGCC TTCCTATAAA CAAAAGCAGA ACAATGACAG GAAGGAATAC
  CAGAAGGCTC CAGGCTAGCT GTGAGCAAAG GAAGTTTGCA GTGCACAGCA TCAGGTCAGG
  GCGTTCCCGA TGGGTCTGCT GCAGCCTGAC TGGCACATTG GAGCTCTTCA AGGAGAAAAG
  AAAGTTCCTG GGTTTGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37064541	NES08357851	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26823319					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37064541	NES08357851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28532346 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	within coordinates
Cpgi2667	CpG island 2667	801 bp proximal
Rr246448	regulatory region 246448	within coordinates
Rr385862	regulatory region 385862	within coordinates
Tssr107205	transcription start site region 107205	1728 bp downstream
Tssr107206	transcription start site region 107206	1873 bp downstream
Tssr107207	transcription start site region 107207	1914 bp downstream