rs26824228 SNP Detail

Summary

• ID
  rs26824228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23449431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCTAGA AAAAGTACTG
  GGTCAATAGC TAGTGAACAA AACCATGGTG TTCCCACACC CCCTGGGGGG GGCATTTATA
  GACCATAACA ATAATTGAGA CATTTAAGCA ATTTCAGATG TCCAAAGTTA ATTGAAGCTT
  TCTTTAATTT TCAAGAAATG ATAAAACAAT GGAAAAAGAA AATCCTTGCC TGGCAGTGAG
  Y
  CTGAAGACAG CTGATCAAAG GGGAAGAAGT CCAGCCACAG ATGGAAGAGA GATGACCTGG
  ACAGTGGGCT GCAGTGGGAA GGAAGCCATG ATTTCAGGAC ATGAAAAGTG GAGTCACACG
  AGGCTCACTG GGTGCTGGTG GGAGGCAGAG GGGTGTACCC TTAAACTGTA ATTGTTTGGT
  GTAAACAGAC TGAATTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37073558	NES08369375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26824228					SNP	T	T	T	T	T	T	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37073558	NES08369375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23449431 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	within coordinates
Ahsa2	AHA1, activator of heat shock protein ATPase 2	1401 bp upstream
Cpgi2649	CpG island 2649	1037 bp distal
Gm47279	predicted gene, 47279	1592 bp upstream
Rr402454	regulatory region 402454	1157 bp downstream
Rr443827	regulatory region 443827	1684 bp distal
Rr443828	regulatory region 443828	911 bp distal
Tssr100626	transcription start site region 100626	1691 bp downstream
Tssr100627	transcription start site region 100627	1642 bp downstream
Tssr100628	transcription start site region 100628	1624 bp downstream
Tssr100629	transcription start site region 100629	1599 bp downstream
Tssr100630	transcription start site region 100630	1581 bp downstream
Tssr107128	transcription start site region 107128	1469 bp upstream
Tssr107129	transcription start site region 107129	1387 bp upstream
Tssr107130	transcription start site region 107130	1370 bp upstream