rs26824549 SNP Detail

Summary

• ID
  rs26824549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:33999484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCCTAT CAATCTTGAG
  TGCTAACCAA AATTATTAGG GTGCTTGTTA AAATACAGGT TTTAGGTCCC AAGACGCAGT
  TCTTAATTTG CATCAAATAT CTAGGTTCAA GGCTGGAACT CTAGCTTTGG TTTAGAGTCA
  ACATCCGGAC TCTACAGAAC CAGCATCATC TGATAGTGAT CACAGCGGGT GCTGACAATT
  Y
  CAAGAGCCTA CTACACACCT GGCATGAGGG TCGAGGAGAT AGCAGGGTAG TGCAGATGCT
  GCCTCCCTCA ACACTGGCCT ATAAATCAGC TTCCCCAGTG CAATCCTCAC TCCGAGGTGA
  CAACTATTAT ATTTTAAAGT TATTATTATT GAGGCAAGTC CTGGGAGGGT AGCTCAGCTG
  GCCTTGGACT GACAATGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37054572	NES08352013	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26824549					SNP	C	C	C	C	C	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054572	NES08352013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33999484 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930469K13Rik	RIKEN cDNA 4930469K13 gene			Intron
				Noncoding-Transcript-Variant
Lcp2	lymphocyte cytosolic protein 2			Intron
Tssr100897	transcription start site region 100897			1827 bp downstream
Tssr100898	transcription start site region 100898			649 bp downstream
Tssr100899	transcription start site region 100899			500 bp downstream