rs26824550 SNP Detail

Summary

• ID
  rs26824550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33999387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGTTGG GTTTCCACCT
  CACCATGTGA CCTTAAGCCA GACCCTTCTT TCTGAATCTT AGTAGCCATC ATCTACAAAG
  CTGAGTAACC ACTCAGTCAG TGCCTATCAA TCTTGAGTGC TAACCAAAAT TATTAGGGTG
  CTTGTTAAAA TACAGGTTTT AGGTCCCAAG ACGCAGTTCT TAATTTGCAT CAAATATCTA
  R
  GTTCAAGGCT GGAACTCTAG CTTTGGTTTA GAGTCAACAT CCGGACTCTA CAGAACCAGC
  ATCATCTGAT AGTGATCACA GCGGGTGCTG ACAATTCCAA GAGCCTACTA CACACCTGGC
  ATGAGGGTCG AGGAGATAGC AGGGTAGTGC AGATGCTGCC TCCCTCAACA CTGGCCTATA
  AATCAGCTTC CCCAGTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37054573	NES08352012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26824550					SNP	G	G	G	G	G	G	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054573	NES08352012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33999387 () rs orientation: forward

Symbol	Name	Function Class
4930469K13Rik	RIKEN cDNA 4930469K13 gene	within coordinates
Lcp2	lymphocyte cytosolic protein 2	within coordinates
Tssr100897	transcription start site region 100897	1730 bp downstream
Tssr100898	transcription start site region 100898	552 bp downstream
Tssr100899	transcription start site region 100899	403 bp downstream