rs26824554 SNP Detail

Summary

• ID
  rs26824554
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33997768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTGGTA ACGTGTCCTG
  TAGAGAAAGA TAGGGGGGAG GGCCCTCAGC TACACAAGTC CCTAGACACA CTGCCTGTAC
  TTCCAGTGCT CTACAGACTG TGTCTTGTCA GACACAACCC ACTGTCATGG GAGATCCGTG
  TTGACATACT AACAATCTGC ATTGACAGTG TTGCGTTGTA ACAACATCAT TATTTTGCTC
  W
  GCTGAAAAGT CAGCTCGGGG AGTTGAAGCG TTCCAAAGCT CTTGAGTCTT CTGCAATCAG
  GTTAGATTGG AGTCTTGCCT ATTTAGCCTT AAAGCACATG CTCTGAGCTG CAGAGGCTTA
  CTGTGGTAAA GGCTACTTAC TAGAAAGGGA GAGATGGGGT AGGAAAATGA ACAGGCAGGG
  CAGGAGGTTA GAACAGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37054577	NES08352032	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26824554					SNP	A	A	A	A	A	A	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054577	NES08352032	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33997768 () rs orientation: forward

Symbol	Name	Function Class
4930469K13Rik	RIKEN cDNA 4930469K13 gene	within coordinates
Lcp2	lymphocyte cytosolic protein 2	within coordinates
Rr444895	regulatory region 444895	590 bp distal
Tssr100891	transcription start site region 100891	810 bp downstream
Tssr100892	transcription start site region 100892	675 bp downstream
Tssr100893	transcription start site region 100893	526 bp downstream
Tssr100894	transcription start site region 100894	511 bp downstream
Tssr100895	transcription start site region 100895	469 bp downstream
Tssr100896	transcription start site region 100896	442 bp downstream
Tssr100897	transcription start site region 100897	111 bp downstream
Tssr100898	transcription start site region 100898	1063 bp upstream
Tssr100899	transcription start site region 100899	1203 bp upstream