rs26824559 SNP Detail

Summary

• ID
  rs26824559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:33996074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTGGGC CTGGCACTGC
  ATCTGCATCT GCATCTCATT TAAGCTCACA ATCAGGTACT GAGACAGCTG CTAGAGGCAG
  CAGGGCTTCC TGTAGTCTAT AGAAAATGGA AAGCACACAT GACTAAAGCT ACCCTTGACA
  AACCTTCAGG AACAGCACCT CACGTACCAA TGGTGCGCTA TTCAAGCATT GGAACAGAGA
  R
  CTAGGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGCAT TTCCATATGT
  GCACTCATGT ATGTGCACAT ACAGATGGAA TCCTGGCTAA CCTGCGTTTG CAGGTTGCCT
  TATGCACCAA TGCTTTAACC TCAGGTCACA CTCACTGCCA ATGGTTGTAT CAGTCTGTGA
  GAAGTGTATA GAGTCTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37054582	NES08352058	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	G	G	G	G	A
ss131941662	ENSMUSSNP594973	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26824559					SNP	A	A	A	A	A	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054582	NES08352058	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33996074 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930469K13Rik	RIKEN cDNA 4930469K13 gene			Intron
				Noncoding-Transcript-Variant
Lcp2	lymphocyte cytosolic protein 2			854 bp upstream
Rr444895	regulatory region 444895			756 bp proximal
Tssr100891	transcription start site region 100891			848 bp upstream
Tssr100892	transcription start site region 100892			1004 bp upstream
Tssr100893	transcription start site region 100893			1041 bp upstream
Tssr100894	transcription start site region 100894			1169 bp upstream
Tssr100895	transcription start site region 100895			1216 bp upstream
Tssr100896	transcription start site region 100896			1247 bp upstream
Tssr100897	transcription start site region 100897			1572 bp upstream