rs26824561 SNP Detail

Summary

• ID
  rs26824561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33995519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAACCATA GGGAGGGGTG
  GTATAAAGGT CTCAGCACAT GTCCTGACAC ACTGGAGGGG CTTTCTGTGC CCTTGCACCT
  CTACTATGTT CATTGTCATT GTCCTGGTCA CCCTGAGTTG GGTGAGTAAT ATTAAAAACA
  GGACACCTTC TCCCCCCCCA CACACACATA TACACACACA CACACAATTT ATTGCTTTGG
  Y
  TTTAAAGGAT GATCTGCAAT ATTCCTTTTC CTAGAATTTC TCTATTTTGA CATTGATTGA
  TTGATTGGTT ATTTGATTGA TTGGTTATTT GATTGACTGG GGTCCAGAAT TCTCACCTAT
  CCACTCCACT CTCCAAGCTT ATACATAAAG CCTAGGTTCA TTCCATGATG CCTTCTTTAC
  TCTCCATTTT CAATTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37054584	NES08352056	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26824561					SNP	T	T	T	T	T	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054584	NES08352056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33995519 () rs orientation: forward

Symbol	Name	Function Class
4930469K13Rik	RIKEN cDNA 4930469K13 gene	within coordinates
Lcp2	lymphocyte cytosolic protein 2	1409 bp upstream
Rr444895	regulatory region 444895	1311 bp proximal
Tssr100891	transcription start site region 100891	1403 bp upstream
Tssr100892	transcription start site region 100892	1559 bp upstream
Tssr100893	transcription start site region 100893	1596 bp upstream
Tssr100894	transcription start site region 100894	1724 bp upstream
Tssr100895	transcription start site region 100895	1771 bp upstream
Tssr100896	transcription start site region 100896	1802 bp upstream