rs26824562 SNP Detail

Summary

• ID
  rs26824562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:33995105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGATCAT CTGTGTTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCCCTGGT GATTTATCTG AGGTATGGAC
  CTGCGGTCCA ATGGTCAAGG GACACATTGG AAAAGACATT TCAGATCAGC AACTCACTAG
  CTTTTTGTAG GCTGTAATCC ATAAACTGTC CCTTATGCAT AAAGGGACAC TGTCCAAGCA
  Y
  GGCAAACAGG CCTGGAGTGA ATCCTAACTC CATTCTGGGC ATTGACAAAG CATGCAGACC
  CCAGAGGAGA CAAATGACAA GGGACAGTGA CTCTGGACTC AGGTACATTC TGGATAAGAC
  TGGGATGTGC TCATGGAGGT GCTTAGGGAG CAAGCAGGTG CTTCTCTACT CTGACTTCAT
  GGCTCCCTTC TGTGCAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37054585	NES08352055	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26824562					SNP	T	T	T	T	T	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054585	NES08352055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33995105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930469K13Rik	RIKEN cDNA 4930469K13 gene			Intron
				Noncoding-Transcript-Variant
Lcp2	lymphocyte cytosolic protein 2			1823 bp upstream
Rr444894	regulatory region 444894			1897 bp distal
Rr444895	regulatory region 444895			1725 bp proximal
Tssr100891	transcription start site region 100891			1817 bp upstream
Tssr100892	transcription start site region 100892			1973 bp upstream