rs26831729 SNP Detail

Summary

• ID
  rs26831729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21101542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTTTTT TTTTTTTAGA
  TTGTTTTATT TATTTACATT CCAAATGTTT GCCCCCTCCC CTCCAAGAGT TCTTCACCTT
  CTCCTCCCTC TCCCAGACAG TATCTTTGTC AGGATGTGCC CCACCTACCC CACCAGGTGG
  TATTGGAGAT CCAGCACACG TGCTTGGGAA GCGCTCCTCC TCAGCTGTAT TTACCAACTC
  Y
  TTATTACCTT GCAATTGCTT GCTTTGCTCC TAGAAAAATT TCCTGGGACA AGGTAAAATA
  ACTACATCTG ACATTTGACA TTGACTTGGG ATGTCTTGGG ACCCATGAGA GATAATGACT
  TTCTGACACA GGTGGAGAGC ACCAATAGGG TATCTGTCCA GTTTCCCTTT AAATTTATAA
  GCAACTTAAA AACAACAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37076548	NES08376364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26831729					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37076548	NES08376364	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21101542 () rs orientation: forward

Symbol	Name	Function Class
Peli1	pellino 1	1219 bp downstream
Rr385739	regulatory region 385739	909 bp upstream
Tssr100555	transcription start site region 100555	1818 bp downstream