rs26831738 SNP Detail

Summary

• ID
  rs26831738
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21097936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAGAAAG AGAGAAGTTA
  CTATTCAGTG TGTTATTGTT GATTTTCAAA TTTAGCATTT TTTTATAACT GCTACTTAAA
  GTTCTATTTC CAAATTACAT ACAAACAGAA ACTTTCTTAA GTTTAGCATG CAACCCTGGA
  GGTCTCCTGT CTTGTTAGGA CATACTGAAG ATAGAGTATG AACACAGTGG TAACTTCGGT
  K
  TTGATTCTTT TCTCCTTCAG GTGGAAATTG AAACCAATCA GCTACAAGAT GGCTCCTTAA
  TTGACCTTTG TGGTGCAACC TTGCTGTGGC GTACTGCAGA AGGCCTTTCC CATACTCCTA
  CTGTGAAGCA CTTAGAAGCT TTAAGACAGG AGATCAATGC AGCTCGGCCG CAGTGCCCTG
  TAGGGTTCAA CACACTAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37076557	NES08376467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26831738					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37076557	NES08376467	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21097936 () rs orientation: forward

Symbol	Name	Function Class
Peli1	pellino 1	within coordinates
Tssr100551	transcription start site region 100551	884 bp upstream
Tssr100552	transcription start site region 100552	1123 bp upstream
Tssr100553	transcription start site region 100553	1153 bp upstream
Tssr100554	transcription start site region 100554	1266 bp upstream
Tssr100555	transcription start site region 100555	1777 bp upstream