rs26835503 SNP Detail

Summary

• ID
  rs26835503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29124598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGAGGTAG GATGAAACAG TCTAAGTTAA CCATGTAGTC
  TTTATTTAGA AAATATGAAT TAAAATACAT TTGTAGCTTC AGATGTTCAT CTGGTGAGAA
  R
  ACATGAAATG CTTACTAGAT GTGTGCTACT GAAGGTTTTA TAATTTCAGA CTTTTTTTTT
  TTTTACTCTT TCAGGATCGC TACTCTTAGA GTCAAAGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ
ss37063731	NES08359046	PERLEGEN	MM_PANEL2	f	SNP		A	A		A	G	G
ss38728091	mCV24536166	ABI	CRAMUS_MOUSE	f	SNP	G	A		G	A
ss131889973	ENSMUSSNP6382066	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ
rs26835503					SNP	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063731	NES08359046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29124598 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	1040 bp upstream
Cpgi2670	CpG island 2670	927 bp distal
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	within coordinates
Rr369144	regulatory region 369144	1615 bp downstream
Rr444150	regulatory region 444150	1698 bp distal
Rr444151	regulatory region 444151	606 bp distal
Tssr100691	transcription start site region 100691	1673 bp downstream
Tssr100692	transcription start site region 100692	1655 bp downstream
Tssr100693	transcription start site region 100693	1602 bp downstream
Tssr107208	transcription start site region 107208	1842 bp upstream