rs26835504 SNP Detail

Summary

• ID
  rs26835504
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29123518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC AACCTGAGGG TTAAGCGCTG
  S
  GCTCCGGTAC TGTATTCTGA CTAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37063732	NES08359045	PERLEGEN	MM_PANEL2	f	SNP			G	C	G		G	G	C	G	C
ss38810095	mCV24536202	ABI	CRAMUS_MOUSE	f	SNP	C	C	G			C		G
ss131889949	ENSMUSSNP4317995	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs26835504					SNP	C	C	G	C	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063732	NES08359045	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29123518 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	within coordinates
Cpgi2670	CpG island 2670	within coordinates
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	within coordinates
Rr369144	regulatory region 369144	535 bp downstream
Rr444150	regulatory region 444150	618 bp distal
Rr444151	regulatory region 444151	within coordinates
Tssr100691	transcription start site region 100691	593 bp downstream
Tssr100692	transcription start site region 100692	575 bp downstream
Tssr100693	transcription start site region 100693	522 bp downstream
Tssr107208	transcription start site region 107208	762 bp upstream