rs26835507 SNP Detail

Summary

• ID
  rs26835507
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:29122689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC CCGAAGAACA ACTCGGCAAC
  W
  CCATCGCCAA GGCAACCTTC TACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37063735	NES08359042	PERLEGEN	MM_PANEL2	f	SNP		T	A	T	T	A
ss131889940	ENSMUSSNP585555	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
rs26835507					SNP	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063735	NES08359042	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29122689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A630052C17Rik	RIKEN cDNA A630052C17 gene			within coordinates
Cpgi2670	CpG island 2670			within coordinates
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr369144	regulatory region 369144			within coordinates
Rr444150	regulatory region 444150			within coordinates
Rr444151	regulatory region 444151			803 bp proximal
Tssr100691	transcription start site region 100691			224 bp upstream
Tssr100692	transcription start site region 100692			245 bp upstream
Tssr100693	transcription start site region 100693			259 bp upstream
Tssr107208	transcription start site region 107208			38 bp downstream